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FORGE - training program for SNAP (version 2006-07-28)
usage: forge [options] <ann> <dna> [options]
options:
-help
-verbose
-pseudocount <float> [1] (absolute number for all models)
-pseudoCoding <float> [0.0] (eg. 0.05)
-pseudoIntron <float> [0.0]
-pseudoInter <float> [0.0]
-min-counts [0]
-lcmask [-fragmentN]
-utr5-length <int> [50]
-utr5-offset <int> [10]
-utr3-length <int> [50]
-utr3-offset <int> [10]
-explicit <int> [250]
-min-intron <int> [30]
-boost <file> (file of ID <int>)